Genome-wide analyses of the bHLH gene family reveals structural and functional characteristics in the aquatic plant Nelumbo nucifera
Identifieur interne : 000212 ( Main/Exploration ); précédent : 000211; suivant : 000213Genome-wide analyses of the bHLH gene family reveals structural and functional characteristics in the aquatic plant Nelumbo nucifera
Auteurs : Tian-Yu Mao [République populaire de Chine] ; Yao-Yao Liu [République populaire de Chine] ; Huan-Huan Zhu [République populaire de Chine] ; Jie Zhang [République populaire de Chine] ; Ju-Xiang Yang [République populaire de Chine] ; Qiang Fu [République populaire de Chine] ; Nian Wang [République populaire de Chine] ; Ze Wang [République populaire de Chine]Source :
- PeerJ [ 2167-8359 ] ; 2019.
Abstract
Lotus (
Url:
DOI: 10.7717/peerj.7153
PubMed: 31231599
PubMed Central: 6573809
Affiliations:
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country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Huan Huan" sort="Zhu, Huan Huan" uniqKey="Zhu H" first="Huan-Huan" last="Zhu">Huan-Huan Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name 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Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Nian" sort="Wang, Nian" uniqKey="Wang N" first="Nian" last="Wang">Nian Wang</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong 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first="Tian-Yu" last="Mao">Tian-Yu Mao</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Yao Yao" sort="Liu, Yao Yao" uniqKey="Liu Y" first="Yao-Yao" last="Liu">Yao-Yao Liu</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Huan Huan" sort="Zhu, Huan Huan" uniqKey="Zhu H" first="Huan-Huan" last="Zhu">Huan-Huan Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Jie" sort="Zhang, Jie" uniqKey="Zhang J" first="Jie" last="Zhang">Jie Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Yang, Ju Xiang" sort="Yang, Ju Xiang" uniqKey="Yang J" first="Ju-Xiang" last="Yang">Ju-Xiang Yang</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Fu, Qiang" sort="Fu, Qiang" uniqKey="Fu Q" first="Qiang" last="Fu">Qiang Fu</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Nian" sort="Wang, Nian" uniqKey="Wang N" first="Nian" last="Wang">Nian Wang</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Ze" sort="Wang, Ze" uniqKey="Wang Z" first="Ze" last="Wang">Ze Wang</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences, Huazhong Agriculture University</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture and Rural Affairs</institution>,<addr-line>Wuhan</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">PeerJ</title><idno type="eISSN">2167-8359</idno><imprint><date when="2019">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Lotus (<italic>Nelumbo nucifera</italic> Gaertn.) is an economically important aquatic plant with multiple applications, but water salinity and cold stress seriously affect lotus yield and distribution. The basic helix-loop-helix (bHLH) transcription factors (TFs) play a vital role in plant growth and development, metabolic regulation processes and responses to environmental changes. However, systematic analyses of the bHLH TF family in lotus has not yet been reported. Here, we report the identification and description of bHLH genes in lotus (<italic>NnbHLHs</italic>) with a focus on functional prediction, particularly for those involved in stress resistance. In all, 115 <italic>NnbHLHs</italic> were identified in the lotus genome and classified into 19 subfamilies. The chromosomal distribution, physicochemical properties, bHLH domain, conserved motif compositions and evolution of these 115 <italic>NnbHLHs</italic> were further analyzed. To better understand the functions of the lotus bHLH family, gene ontology, cis-element, and phylogenetic analyses were conducted. <italic>NnbHLHs</italic> were predicted to be involved in plant development, metabolic regulation and responses to stress, in accordance with previous findings. Overall, 15 <italic>NnbHLHs</italic> were further investigated with functional prediction via quantitative real-time PCR analyses. Meanwhile, expression profiles of <italic>NnbHLHs</italic> in four tissues indicated that many <italic>NnbHLHs</italic> showed tissue preference in their expression. This study is supposed to provide a good foundation for further research into the functions and evolution of <italic>NnbHLHs</italic>, and identifies candidate genes for stress resistance in lotus.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Ahmad, A" uniqKey="Ahmad A">A Ahmad</name></author><author><name sortKey="Niwa, Y" uniqKey="Niwa Y">Y Niwa</name></author><author><name sortKey="Goto, S" uniqKey="Goto S">S Goto</name></author><author><name sortKey="Ogawa, T" uniqKey="Ogawa T">T Ogawa</name></author><author><name sortKey="Shimizu, M" uniqKey="Shimizu M">M Shimizu</name></author><author><name sortKey="Suzuki, A" uniqKey="Suzuki A">A Suzuki</name></author><author><name sortKey="Kobayashi, K" uniqKey="Kobayashi K">K Kobayashi</name></author><author><name sortKey="Kobayashi, H" uniqKey="Kobayashi H">H Kobayashi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="An, R" uniqKey="An R">R 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Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zumajo Cardona, C" uniqKey="Zumajo Cardona C">C Zumajo-Cardona</name></author><author><name sortKey="Ambrose, Ba" uniqKey="Ambrose B">BA Ambrose</name></author><author><name sortKey="Pab N Mora, N" uniqKey="Pab N Mora N">N Pabón-Mora</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Mao, Tian Yu" sort="Mao, Tian Yu" uniqKey="Mao T" first="Tian-Yu" last="Mao">Tian-Yu Mao</name></noRegion><name sortKey="Fu, Qiang" sort="Fu, Qiang" uniqKey="Fu Q" first="Qiang" last="Fu">Qiang Fu</name><name sortKey="Fu, Qiang" sort="Fu, Qiang" uniqKey="Fu Q" first="Qiang" last="Fu">Qiang Fu</name><name sortKey="Liu, Yao Yao" sort="Liu, Yao Yao" uniqKey="Liu Y" first="Yao-Yao" last="Liu">Yao-Yao Liu</name><name sortKey="Liu, Yao Yao" sort="Liu, Yao Yao" uniqKey="Liu Y" first="Yao-Yao" last="Liu">Yao-Yao Liu</name><name sortKey="Mao, Tian Yu" sort="Mao, Tian Yu" uniqKey="Mao T" first="Tian-Yu" last="Mao">Tian-Yu Mao</name><name sortKey="Wang, Nian" sort="Wang, Nian" uniqKey="Wang N" first="Nian" last="Wang">Nian Wang</name><name sortKey="Wang, Nian" sort="Wang, Nian" uniqKey="Wang N" first="Nian" last="Wang">Nian Wang</name><name sortKey="Wang, Ze" sort="Wang, Ze" uniqKey="Wang Z" first="Ze" last="Wang">Ze Wang</name><name sortKey="Wang, Ze" sort="Wang, Ze" uniqKey="Wang Z" first="Ze" last="Wang">Ze Wang</name><name sortKey="Yang, Ju Xiang" sort="Yang, Ju Xiang" uniqKey="Yang J" first="Ju-Xiang" last="Yang">Ju-Xiang Yang</name><name sortKey="Yang, Ju Xiang" sort="Yang, Ju Xiang" uniqKey="Yang J" first="Ju-Xiang" last="Yang">Ju-Xiang Yang</name><name sortKey="Zhang, Jie" sort="Zhang, Jie" uniqKey="Zhang J" first="Jie" last="Zhang">Jie Zhang</name><name sortKey="Zhang, Jie" sort="Zhang, Jie" uniqKey="Zhang J" first="Jie" last="Zhang">Jie Zhang</name><name sortKey="Zhu, Huan Huan" sort="Zhu, Huan Huan" uniqKey="Zhu H" first="Huan-Huan" last="Zhu">Huan-Huan Zhu</name><name sortKey="Zhu, Huan Huan" sort="Zhu, Huan Huan" uniqKey="Zhu H" first="Huan-Huan" last="Zhu">Huan-Huan Zhu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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